Organiser: CNR-IRSA Verbania
22-24 April 2024
Where: online, https://l.cnr.it/mgu6o
Teachers: Dr. Cristiana Callieri, Dr. Ester M. Eckert, Dr. Emanuele Ferrari, Dr. Laura Garzoli, Dr. Sven Iburg
Program
Monday, April 22nd
Module 1: Aquatic microbial communities isolation and assessment methods.
– 10.00 – 12:00 Methods for isolating fungi and bacteria from aquatic ecosystems
(Dr. Laura Garzoli, Dr. Sven Iburg)
– 15.00 – 16.00 Marine and freshwater picocyanobacteria: who they are and how to isolate and culture them (Dr. Cristiana Callieri)
Tuesday, April 23rd
Module 2. Protein identification through nLC-HRMS proteomics and bioinformatic analysis of large protein datasets. (Dr. Emanuele Ferrari)
– 10.00 – 12:00 Mass spectrometry applications in proteomics of microbial communities.
– 13.30 – 15.30 Bioinformatics analysis of proteomic data: proteins identification and functional analysis.
Wednesday, April 24th
Module 3. high throughput sequence analysis of amplicon sequencing data (metabarcoding) and analyses of the communities in terms of diversity and composition.
(Dr. Ester Eckert)
– 10.00 – 12:00 / 13.30 – 15.30 Analysis of metarbacoding data on bacteria, fungi, and meiofauna. R-based course with packages DADA2, vegan, ggplot2, phyloseq.
For further information: please write and email to laura.garzoli@cnr.it
Registration to the course: https://docs.google.com/forms/d/e/1FAIpQLSdjfAjsciT_t2qy0JdOUfbz_FdNZK-mZ19fSkLNaBlAMPn6DQ/viewform
Maximum participants: 500